Comprehensive AI-Driven Enzyme Engineering Platform

AI-Driven Enzyme Design
Services

From AI-powered computational design to wet lab validation, our comprehensive enzyme engineering platform delivers production-ready biocatalysts optimized for your specific application needs.

Complete Enzyme Solutions

AI Design Validation Scale-up
Platform Overview

Why Choose Our Enzyme Design Services?

Our integrated AI-powered platform combines computational design with high-throughput wet lab validation to deliver optimized enzymes faster and more reliably than traditional approaches.

Accelerated Development

AI-guided mutation prediction reduces screening libraries dramatically while achieving significant improvements in catalytic efficiency.

Faster Time to Market

Our integrated approach significantly reduces development timelines compared to traditional directed evolution methods.

Process-Ready Stability

Engineered for thermostability, pH tolerance, and organic solvent resistance. Tm improvements of 10-20°C standard.

Complete Documentation

Full QC documentation, sequence data, and characterization reports for regulatory submissions.

Our Services

Comprehensive Enzyme Engineering Solutions

Tailored services for every stage of enzyme development

AI-Driven Enzyme Optimization

Enhance catalytic activity, substrate specificity, and operational stability using our AI-guided design platform combining structure analysis and ML predictions.

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De Novo Protein Design

Create entirely novel enzymes from scratch for non-natural reactions using cutting-edge deep learning approaches like family-wide hallucination.

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Stability Engineering

Improve thermostability, pH tolerance, and solvent resistance using ML-predicted stabilizing mutations and rational design strategies.

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AI-Driven Services

Our AI-Powered Design Platform

Advanced computational tools combined with high-throughput experimental validation

Structure-Based Design

Enginoma Structure predictions and PDB data guide active site analysis, pocket optimization, and residue engineering decisions.

Enginoma StructureActive SitePocket Analysis

Protein Language Models

ESM, Tranception, and custom models trained on sequence-function datasets predict beneficial mutations without experimental data.

ESM ModelsZero-ShotVariant Scoring

HTP Validation

Automated microtiter screening, thermal shift assays, and kinetic characterization validate AI predictions efficiently.

HTSDSFKinetics
Capabilities

Service Specifications

Enzyme Classes

All six EC classes supported

OxidoreductasesTransferasesHydrolasesLyasesIsomerasesLigases

Expression Systems

Multiple host options for optimal production

E. coliPichia pastorisSaccharomycesInsect CellsMammalian

Design Outcomes

Quantifiable improvements in target properties

Catalytic EfficiencyStabilitypH RangeSolvent Tolerance

Deliverables

Complete documentation package

Sequence DataPurity DataQC ReportScale-up Support
Our Process

From Target to Production

Streamlined workflow from computational design to validated enzyme delivery

1

Target Analysis

Define enzyme properties, success criteria, and screening assays based on your application requirements.

2

Computational Design

AI models predict beneficial mutations and generate focused variant libraries ranked by predicted improvements.

3

Expression & Screening

Variants expressed and screened using automated assays for activity, stability, and target properties.

4

Scale-up & Delivery

Lead variants scaled up with full characterization and documentation package delivery.

Trusted by Leading Research Institutions

Client Feedback

What Our Clients Say

"The combination of rational design and directed evolution yielded a 25-fold increase in our target enzyme's turnover rate, which was critical for process economics."

Biocatalysis Lead
Global Pharmaceutical Company

"We struggled to find a lipase with sufficient solvent tolerance. Their comprehensive optimization service delivered a variant stable in 40% organic solvent, a game-changer for our synthesis."

Senior Process Chemist
Specialty Chemicals Manufacturer

"The de novo enzyme design service successfully engineered an initial scaffold for a completely novel C-H activation reaction, an area previously considered impossible for biocatalysis."

Principal Investigator
Research University
Applications

Industries We Serve

Engineered enzymes for pharmaceutical, industrial, and emerging applications

Pharmaceutical Manufacturing

Enzymes for API synthesis, chiral resolution, and stereoselective transformations. Reduce chemical steps and eliminate heavy metal catalysts.

API SynthesisChiral Chemistry

Industrial Biocatalysis

Process-stable enzymes for bulk chemical production, polymer modification, and specialty ingredients. Engineered for flow reactors.

Bulk ChemicalsFlow Chemistry

Food & Agriculture

Enzymes for food processing, feed additives, and crop protection. Improve nutritional value and processing efficiency.

Food ProcessingAnimal Feed

Green Energy

Cellulases, lipases, and oxidoreductases for biofuel production, biomass conversion, and sustainable manufacturing.

BiofuelsBiomass

Diagnostics & Biosensors

Highly specific enzymes for diagnostic assays, biosensor signal generation, and point-of-care testing platforms.

DiagnosticsBiosensors

Environmental Biotech

Enzymes for bioremediation, plastic degradation, and wastewater treatment. Engineered for recalcitrant pollutants.

BioremediationPlastic Degradation
References

Key Publications

Our platform builds on peer-reviewed methods published in leading journals

1

Xie, W.J. & Warshel, A. Harnessing generative AI to decode enzyme catalysis and evolution for enhanced engineering. Natl Sci Rev 10, nwad331 (2023). https://doi.org/10.1093/nsr/nwad331

Review of generative AI applications in enzyme engineering.
2

Yeh, A.H.-W., Norn, C., Kipnis, Y., et al. De novo design of luciferases using deep learning. Nature 614, 774-780 (2023). https://doi.org/10.1038/s41586-023-05696-3

Deep learning design of custom luciferases from scratch.
3

Zimmerman L, Alon N, Levin I, Koganitsky A, Shpigel N, Brestel C, Lapidoth GD Context-dependent design of induced-fit enzymes using deep learning generates well-expressed, thermally stable and active enzymes. PNAS 121, e2313809121 (2024). https://doi.org/10.1073/pnas.2313809121

CoSaNN strategy for thermally stable enzyme design.
4

Braun M, Gruber CC, Krassnigg A, et al. Accelerating Biocatalysis Discovery with Machine Learning: A Paradigm Shift in Enzyme Engineering, Discovery, and Design. ACS Catalysis 13, 14454-14469 (2023). https://doi.org/10.1021/acscatal.3c03417

Paradigm shift in ML-guided enzyme engineering.
5

Notin, P., Dias, M., Frazer, J., et al. Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval. ICML 2022 (2022). https://proceedings.mlr.press/v162/notin22a.html

State-of-the-art protein fitness prediction using autoregressive transformers with retrieval mechanism.
FAQ

Common Questions

We offer comprehensive enzyme design services including AI-driven enzyme optimization, de novo enzyme design, stability engineering, and substrate scope expansion. Our platform covers all six EC enzyme classes: oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases.

We deliver enzymes with detailed QC documentation including SDS-PAGE analysis, HPLC purity data, and activity assay results. Each project includes comprehensive quality characterization.

Yes. We offer seamless scale-up from milligram to kilogram quantities using our established fermentation and purification infrastructure. We support Titer from 300L to 20,000L production runs.

Our engineered enzymes serve pharmaceutical manufacturing, industrial biocatalysis, food processing, biofuels, and environmental bioremediation applications. We work closely with clients to ensure enzymes meet specific process requirements.

Ready to Engineer Your Enzyme?

Whether you need higher activity, broader substrate scope, or improved process stability, our team can deliver optimized enzymes for your application.